XCIR
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see XCIR.
XCI-inference
Bioconductor version: 3.10
Models and tools for subject level analysis of X chromosome inactivation (XCI) and XCI-escape inference.
Author: Renan Sauteraud, Dajiang Liu
Maintainer: Renan Sauteraud <rxs575 at psu.edu>
Citation (from within R, enter
citation("XCIR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("XCIR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("XCIR") Reference Manual
PDF
NEWS
Text
Details
Version
1.0.0
In Bioconductor since
BioC 3.10 (R-3.6) (4.5 years)
License
GPL-2
Depends
methods
Imports
stats, utils, data.table, IRanges, VariantAnnotation, seqminer, ggplot2, biomaRt, readxl, S4Vectors
System Requirements
Bug Reports
https://github.com/SRenan/XCIR/issues
See More
Suggests
knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
XCIR_1.0.0.tar.gz
Windows Binary
XCIR_1.0.0.zip
Mac OS X 10.11 (El Capitan)
XCIR_1.0.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/XCIR
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/XCIR
Bioc Package Browser
https://code.bioconductor.org/browse/XCIR/
Package Short Url
https://bioconductor.org/packages/XCIR/
Package Downloads Report
Download Stats
Old Source Packages for BioC 3.10
Source Archive