ProteomicsAnnotationHubData

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ProteomicsAnnotationHubData .

Transform public proteomics data resources into Bioconductor Data Structures

DOI: 10.18129/B9.bioc.ProteomicsAnnotationHubData

Bioconductor version: 3.10

These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.

Author: Gatto Laurent [aut, cre], Sonali Arora [aut]

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("ProteomicsAnnotationHubData")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ProteomicsAnnotationHubData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ProteomicsAnnotationHubData")

Proteomics Data in Annotation Hub HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Proteomics, Software

Version 1.16.0

In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)

License Artistic-2.0

Depends AnnotationHub(>= 2.1.45), AnnotationHubData

Imports mzR(>= 2.3.2), MSnbase, Biostrings, GenomeInfoDb, utils, Biobase, BiocManager, RCurl

System Requirements

URL https://github.com/lgatto/ProteomicsAnnotationHubData

Bug Reports https://github.com/lgatto/ProteomicsAnnotationHubData/issues

Suggests knitr, BiocStyle, rmarkdown, testthat

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ProteomicsAnnotationHubData_1.16.0.tar.gz

Windows Binary ProteomicsAnnotationHubData_1.16.0.zip

Mac OS X 10.11 (El Capitan) ProteomicsAnnotationHubData_1.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ProteomicsAnnotationHubData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ProteomicsAnnotationHubData

Bioc Package Browser https://code.bioconductor.org/browse/ProteomicsAnnotationHubData/

Package Short Url https://bioconductor.org/packages/ProteomicsAnnotationHubData/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.10 Source Archive