PANR

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see PANR.

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

Bioconductor version: 3.10

This package provides S4 classes and methods for inferring functional gene networks with edges encoding posterior beliefs of gene association types and nodes encoding perturbation effects.

Author: Xin Wang <xin_wang at hms.harvard.edu>

Maintainer: Xin Wang <xin_wang at hms.harvard.edu>

Citation (from within R, enter citation("PANR")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("PANR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PANR")

Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBasedAssays, Clustering, GraphAndNetwork, ImmunoOncology, NetworkInference, Software, Visualization

Version 1.32.0

In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)

License Artistic-2.0

Depends R (>= 2.14), igraph

Imports graphics, grDevices, MASS, methods, pvclust, stats, utils, RedeR

System Requirements

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Imports Me Mulder2012

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PANR_1.32.0.tar.gz

Windows Binary PANR_1.32.0.zip

Mac OS X 10.11 (El Capitan) PANR_1.32.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/PANR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PANR

Bioc Package Browser https://code.bioconductor.org/browse/PANR/

Package Short Url https://bioconductor.org/packages/PANR/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.10 Source Archive