BiocCaseStudies

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see BiocCaseStudies.

BiocCaseStudies: Support for the Case Studies Monograph

DOI: 10.18129/B9.bioc.BiocCaseStudies

Bioconductor version: 3.10

Software and data to support the case studies.

Author: R. Gentleman, W. Huber, F. Hahne, M. Morgan, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BiocCaseStudies")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BiocCaseStudies")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Software

Version 1.48.0

In Bioconductor since BioC 2.2 (R-2.7) (16 years)

License Artistic-2.0

Depends tools, methods, utils, Biobase

Imports

System Requirements

URL

Suggests affy(>= 1.17.3), affyPLM(>= 1.15.1), affyQCReport(>= 1.17.0), ALL(>= 1.4.3), annaffy(>= 1.11.1), annotate(>= 1.17.3), AnnotationDbi(>= 1.1.6), apComplex(>= 2.5.0), Biobase(>= 1.17.5), bioDist(>= 1.11.3), biocGraph(>= 1.1.1), biomaRt(>= 1.13.5), CCl4(>= 1.0.6), CLL(>= 1.2.4), Category(>= 2.5.0), class (>= 7.2-38), cluster (>= 1.11.9), convert(>= 1.15.0), gcrma(>= 2.11.1), genefilter(>= 1.17.6), geneplotter(>= 1.17.2), GO.db(>= 2.0.2), GOstats(>= 2.5.0), graph(>= 1.17.4), GSEABase(>= 1.1.13), hgu133a.db(>= 2.0.2), hgu95av2.db, hgu95av2cdf(>= 2.0.0), hgu95av2probe(>= 2.0.0), hopach(>= 1.13.0), KEGG.db(>= 2.0.2), kohonen (>= 2.0.2), lattice (>= 0.17.2), latticeExtra (>= 0.3-1), limma(>= 2.13.1), MASS (>= 7.2-38), MLInterfaces(>= 1.13.17), multtest(>= 1.19.0), org.Hs.eg.db(>= 2.0.2), ppiStats(>= 1.5.4), randomForest (>= 4.5-20), RBGL(>= 1.15.6), RColorBrewer (>= 1.0-2), Rgraphviz(>= 1.17.11), vsn(>= 3.4.0), weaver(>= 1.5.0), xtable (>= 1.5-2), yeastExpData(>= 0.9.11)

Linking To

Enhances

Depends On Me

Imports Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocCaseStudies_1.48.0.tar.gz

Windows Binary BiocCaseStudies_1.48.0.zip

Mac OS X 10.11 (El Capitan) BiocCaseStudies_1.48.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/BiocCaseStudies

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocCaseStudies

Bioc Package Browser https://code.bioconductor.org/browse/BiocCaseStudies/

Package Short Url https://bioconductor.org/packages/BiocCaseStudies/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.10 Source Archive