To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("leeBamViews")

In most cases, you don't need to download the package archive at all.

leeBamViews

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see leeBamViews.

leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009

Bioconductor version: 3.1

data from PMID 19096707; prototype for managing multiple NGS samples

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("leeBamViews")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("leeBamViews")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("leeBamViews")
PDF R Script managing multiple NGS samples with bamViews
PDF Reference Manual

Details

biocViews ExperimentData, RNASeqData, SNPData, Saccharomyces_cerevisiae_Data, SequencingData
Version 1.4.0
License Artistic 2.0
Depends R (>= 2.15.0), Biobase, Rsamtools(>= 0.1.50), BSgenome
Imports GenomicRanges, GenomicAlignments, methods
LinkingTo
Suggests GenomeGraphs, biomaRt, org.Sc.sgd.db, edgeR
SystemRequirements
Enhances multicore
URL
Depends On Me
Imports Me
Suggests Me EDASeq
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source leeBamViews_1.4.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/leeBamViews/
Package Downloads Report Download Stats

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