To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ssviz")

In most cases, you don't need to download the package archive at all.

ssviz

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see ssviz.

A small RNA-seq visualizer and analysis toolkit

Bioconductor version: 3.1

Small RNA sequencing viewer

Author: Diana Low

Maintainer: Diana Low <lowdiana at gmail.com>

Citation (from within R, enter citation("ssviz")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ssviz")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("ssviz")
PDF R Script ssviz
PDF Reference Manual
Text NEWS

Details

biocViews Genetics, MultipleComparison, RNASeq, Sequencing, Software, Visualization
Version 1.2.1
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License GPL-2
Depends R (>= 2.15.1), methods, Rsamtools, Biostrings, reshape, ggplot2, RColorBrewer
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ssviz_1.2.1.tar.gz
Windows Binary ssviz_1.2.1.zip
Mac OS X 10.6 (Snow Leopard) ssviz_1.2.1.tgz
Mac OS X 10.9 (Mavericks) ssviz_1.2.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ssviz/tree/release-3.1
Package Short Url http://bioconductor.org/packages/ssviz/
Package Downloads Report Download Stats

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