To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("siggenes")

In most cases, you don't need to download the package archive at all.

siggenes

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see siggenes.

Multiple testing using SAM and Efron's empirical Bayes approaches

Bioconductor version: 3.1

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at gmx.de>

Citation (from within R, enter citation("siggenes")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("siggenes")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("siggenes")
PDF R Script siggenes Manual
PDF Reference Manual

Details

biocViews DifferentialExpression, ExonArray, GeneExpression, Microarray, MultipleComparison, SNP, Software
Version 1.42.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License LGPL (>= 2)
Depends methods, Biobase, multtest, splines, graphics
Imports stats4
LinkingTo
Suggests affy, annotate, genefilter, KernSmooth, scrime (>= 1.2.5)
SystemRequirements
Enhances
URL
Depends On Me KCsmart, oneChannelGUI
Imports Me charm, DeSousa2013, GeneSelector, minfi
Suggests Me GeneSelector, logicFS, trio, XDE
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source siggenes_1.42.0.tar.gz
Windows Binary siggenes_1.42.0.zip
Mac OS X 10.6 (Snow Leopard) siggenes_1.42.0.tgz
Mac OS X 10.9 (Mavericks) siggenes_1.42.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/siggenes/tree/release-3.1
Package Short Url http://bioconductor.org/packages/siggenes/
Package Downloads Report Download Stats

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