To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("shinyMethyl")

In most cases, you don't need to download the package archive at all.

shinyMethyl

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see shinyMethyl.

Interactive visualization for Illumina's 450k methylation arrays

Bioconductor version: 3.1

Interactive tool for visualizing Illumina's 450k array data

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>

Citation (from within R, enter citation("shinyMethyl")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("shinyMethyl")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("shinyMethyl")
PDF R Script shinyMethyl: interactive visualization of Illumina 450K methylation arrays
PDF Reference Manual
Text NEWS

Details

biocViews DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.2.0
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License Artistic-2.0
Depends methods, BiocGenerics(>= 0.3.2), shiny (>= 0.9.1), minfi(>= 1.6.0), IlluminaHumanMethylation450kmanifest, matrixStats, R (>= 3.0.0)
Imports RColorBrewer
LinkingTo
Suggests shinyMethylData, minfiData, BiocStyle, RUnit, digest, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source shinyMethyl_1.2.0.tar.gz
Windows Binary shinyMethyl_1.2.0.zip
Mac OS X 10.6 (Snow Leopard) shinyMethyl_1.2.0.tgz
Mac OS X 10.9 (Mavericks) shinyMethyl_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/shinyMethyl/tree/release-3.1
Package Short Url http://bioconductor.org/packages/shinyMethyl/
Package Downloads Report Download Stats

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