To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("scsR")

In most cases, you don't need to download the package archive at all.

scsR

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see scsR.

SiRNA correction for seed mediated off-target effect

Bioconductor version: 3.1

Corrects genome-wide siRNA screens for seed mediated off-target effect. Suitable functions to identify the effective seeds/miRNAs and to visualize their effect are also provided in the package.

Author: Andrea Franceschini

Maintainer: Andrea Franceschini <andrea.franceschini at isb-sib.ch>, Roger Meier <roger.meier at lmsc.ethz.ch>, Christian von Mering <mering at imls.uzh.ch>

Citation (from within R, enter citation("scsR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("scsR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("scsR")
PDF R Script scsR Vignette
PDF Reference Manual

Details

biocViews Preprocessing, Software
Version 1.4.0
In Bioconductor since BioC 2.14 (R-3.1) (2 years)
License GPL-2
Depends R (>= 2.14.0), STRINGdb, methods, BiocGenerics, Biostrings, IRanges, plyr, tcltk
Imports sqldf, hash, ggplot2, graphics, grDevices, RColorBrewer
LinkingTo
Suggests RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source scsR_1.4.0.tar.gz
Windows Binary scsR_1.4.0.zip
Mac OS X 10.6 (Snow Leopard) scsR_1.4.0.tgz
Mac OS X 10.9 (Mavericks) scsR_1.4.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/scsR/tree/release-3.1
Package Short Url http://bioconductor.org/packages/scsR/
Package Downloads Report Download Stats

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