To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("savR")

In most cases, you don't need to download the package archive at all.

savR

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see savR.

Parse and analyze Illumina SAV files

Bioconductor version: 3.1

Parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.

Author: R. Brent Calder

Maintainer: R. Brent Calder <brent.calder at einstein.yu.edu>

Citation (from within R, enter citation("savR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("savR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("savR")
PDF R Script Using savR
PDF Reference Manual

Details

biocViews Sequencing, Software
Version 1.7.5
In Bioconductor since BioC 2.14 (R-3.1) (2 years)
License AGPL-3
Depends ggplot2
Imports methods, reshape2, scales, gridExtra, XML
LinkingTo
Suggests Cairo, testthat
SystemRequirements
Enhances
URL https://github.com/bcalder/savR
BugReports https://github.com/bcalder/savR/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source savR_1.7.5.tar.gz
Windows Binary savR_1.7.5.zip
Mac OS X 10.6 (Snow Leopard) savR_1.7.5.tgz
Mac OS X 10.9 (Mavericks) savR_1.7.5.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/savR/tree/release-3.1
Package Short Url http://bioconductor.org/packages/savR/
Package Downloads Report Download Stats

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