To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("qrqc")

In most cases, you don't need to download the package archive at all.

qrqc

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see qrqc.

Quick Read Quality Control

Bioconductor version: 3.1

Quickly scans reads and gathers statistics on base and quality frequencies, read length, k-mers by position, and frequent sequences. Produces graphical output of statistics for use in quality control pipelines, and an optional HTML quality report. S4 SequenceSummary objects allow specific tests and functionality to be written around the data collected.

Author: Vince Buffalo

Maintainer: Vince Buffalo <vsbuffalo at ucdavis.edu>

Citation (from within R, enter citation("qrqc")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("qrqc")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("qrqc")
PDF R Script Using the qrqc package to gather information about sequence qualities
PDF Reference Manual
Text NEWS

Details

biocViews DataImport, Preprocessing, QualityControl, Sequencing, Software, Visualization
Version 1.22.0
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License GPL (>=2)
Depends reshape, ggplot2, Biostrings, biovizBase, brew, xtable, Rsamtools(>= 1.19.38), testthat
Imports reshape, ggplot2, Biostrings, biovizBase, graphics, methods, plyr, stats
LinkingTo Rsamtools
Suggests
SystemRequirements
Enhances
URL http://github.com/vsbuffalo/qrqc
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source qrqc_1.22.0.tar.gz
Windows Binary qrqc_1.22.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) qrqc_1.22.0.tgz
Mac OS X 10.9 (Mavericks) qrqc_1.22.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/qrqc/tree/release-3.1
Package Short Url http://bioconductor.org/packages/qrqc/
Package Downloads Report Download Stats

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