To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("proBAMr")

In most cases, you don't need to download the package archive at all.

proBAMr

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see proBAMr.

Generating SAM file for PSMs in shotgun proteomics data

Bioconductor version: 3.1

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

Author: Xiaojing Wang

Maintainer: Xiaojing Wang <xiaojing.wang at vanderbilt.edu>

Citation (from within R, enter citation("proBAMr")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("proBAMr")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("proBAMr")
PDF R Script Introduction to proBAMr
PDF Reference Manual
Text NEWS

Details

Version 1.2.0
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License Artistic-2.0
Depends R (>= 3.0.1), IRanges, AnnotationDbi
LinkingTo
Suggests RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source proBAMr_1.2.0.tar.gz
Windows Binary proBAMr_1.2.0.zip
Mac OS X 10.6 (Snow Leopard) proBAMr_1.2.0.tgz
Package Downloads Report Download Stats

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