To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("plethy")

In most cases, you don't need to download the package archive at all.

plethy

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see plethy.

R framework for exploration and analysis of respirometry data

Bioconductor version: 3.1

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

Author: Daniel Bottomly [aut, cre], Marty Ferris [ctb], Beth Wilmot [aut], Shannon McWeeney [aut]

Maintainer: Daniel Bottomly <bottomly at ohsu.edu>

Citation (from within R, enter citation("plethy")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("plethy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("plethy")
PDF R Script plethy
PDF Reference Manual
Text NEWS

Details

biocViews DataImport, DataRepresentation, Infastructure, Software, TimeCourse, biocViews
Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0) (2.5 years)
License GPL-3
Depends R (>= 3.1.0), methods, BiocGenerics, S4Vectors
Imports Streamer, DBI, RSQLite (>= 1.0.0), IRanges, reshape2, plyr, RColorBrewer, ggplot2, Biobase
LinkingTo
Suggests RUnit, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source plethy_1.6.0.tar.gz
Windows Binary plethy_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) plethy_1.6.0.tgz
Mac OS X 10.9 (Mavericks) plethy_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/plethy/tree/release-3.1
Package Short Url http://bioconductor.org/packages/plethy/
Package Downloads Report Download Stats

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