To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("oposSOM")
In most cases, you don't need to download the package archive at all.
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see oposSOM.
Bioconductor version: 3.1
This package translates microarray expression data into metadata of reduced dimension. It provides various sample-centered and group-centered visualizations, sample similarity analyses and functional enrichment analyses. The underlying SOM algorithm combines feature clustering, multidimensional scaling and dimension reduction, along with strong visualization capabilities. It enables extraction and description of functional expression modules inherent in the data.
Author: Henry Wirth <wirth at izbi.uni-leipzig.de> and Martin Kalcher <mkalcher at porkbox.net>
Maintainer: Henry Wirth <wirth at izbi.uni-leipzig.de>
Citation (from within R,
enter citation("oposSOM")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("oposSOM")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("oposSOM")
Follow Installation instructions to use this package in your R session.
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