To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nnNorm")

In most cases, you don't need to download the package archive at all.

nnNorm

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see nnNorm.

Spatial and intensity based normalization of cDNA microarray data based on robust neural nets

Bioconductor version: 3.1

This package allows to detect and correct for spatial and intensity biases with two-channel microarray data. The normalization method implemented in this package is based on robust neural networks fitting.

Author: Adi Laurentiu Tarca <atarca at med.wayne.edu>

Maintainer: Adi Laurentiu Tarca <atarca at med.wayne.edu>

Citation (from within R, enter citation("nnNorm")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nnNorm")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("nnNorm")
PDF R Script nnNorm Tutorial
PDF Reference Manual

Details

biocViews Microarray, Preprocessing, Software, TwoChannel
Version 2.32.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License LGPL
Depends R (>= 2.2.0), marray
Imports graphics, grDevices, marray, methods, nnet, stats
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://bioinformaticsprb.med.wayne.edu/tarca/
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source nnNorm_2.32.0.tar.gz
Windows Binary nnNorm_2.32.0.zip
Mac OS X 10.6 (Snow Leopard) nnNorm_2.32.0.tgz
Mac OS X 10.9 (Mavericks) nnNorm_2.32.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/nnNorm/tree/release-3.1
Package Short Url http://bioconductor.org/packages/nnNorm/
Package Downloads Report Download Stats

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