To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("msa")
In most cases, you don't need to download the package archive at all.
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see msa.
Bioconductor version: 3.1
This package provides a unified R/Bioconductor interface to the multiple sequence alignment algorithms ClustalW, ClustalOmega, and Muscle. All three algorithms are integrated in the package, therefore, they do not depend on any external software tools and are available for all major platforms. The multiple sequence alignment algorithms are complemented by a function for pretty-printing multiple sequence alignments using the LaTeX package TeXshade.
Author: Enrico Bonatesta, Christoph Horejs-Kainrath, Ulrich Bodenhofer
Maintainer: Ulrich Bodenhofer <bodenhofer at bioinf.jku.at>
Citation (from within R,
enter citation("msa")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("msa")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("msa")
Follow Installation instructions to use this package in your R session.
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