To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("manta")

In most cases, you don't need to download the package archive at all.

manta

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see manta.

Microbial Assemblage Normalized Transcript Analysis

Bioconductor version: 3.1

Tools for robust comparative metatranscriptomics.

Author: Ginger Armbrust, Adrian Marchetti

Maintainer: Chris Berthiaume <chrisbee at uw.edu>, Adrian Marchetti <amarchetti at unc.edu>

Citation (from within R, enter citation("manta")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("manta")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("manta")
PDF R Script manta
PDF Reference Manual
Text NEWS
Text LICENSE

Details

biocViews DataImport, DifferentialExpression, GeneExpression, Genetics, QualityControl, RNASeq, Sequencing, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 2.10 (R-2.15) (4 years)
License Artistic-2.0
Depends R (>= 1.8.0), methods, edgeR(>= 2.5.13)
Imports Hmisc, caroline (>= 0.6.6)
LinkingTo
Suggests RSQLite, plotrix
SystemRequirements
Enhances
URL http://manta.ocean.washington.edu/
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source manta_1.14.0.tar.gz
Windows Binary manta_1.14.0.zip
Mac OS X 10.6 (Snow Leopard) manta_1.14.0.tgz
Mac OS X 10.9 (Mavericks) manta_1.14.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/manta/tree/release-3.1
Package Short Url http://bioconductor.org/packages/manta/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

AltStyle によって変換されたページ (->オリジナル) /