To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("groHMM")

In most cases, you don't need to download the package archive at all.

groHMM

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see groHMM.

GRO-seq Analysis Pipeline.

Bioconductor version: 3.1

A pipeline for the analysis of GRO-seq data.

Author: Charles G. Danko, Minho Chae, Andre Martins, W. Lee Kraus

Maintainer: Anusha Nagari<anusha.nagari at utsouthwestern.edu>, W. Lee Kraus <lee.kraus at utsouthwestern.edu>

Citation (from within R, enter citation("groHMM")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("groHMM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("groHMM")
PDF R Script groHMM tutorial
PDF Reference Manual
Text NEWS

Details

biocViews Sequencing, Software
Version 1.3.1
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License GPL-3
Depends R (>= 3.0.2), MASS, S4Vectors, IRanges, GenomicRanges, GenomicAlignments, rtracklayer, parallel
Imports
LinkingTo
Suggests BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source groHMM_1.3.1.tar.gz
Windows Binary groHMM_1.3.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) groHMM_1.3.1.tgz
Mac OS X 10.9 (Mavericks) groHMM_1.3.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/groHMM/tree/release-3.1
Package Short Url http://bioconductor.org/packages/groHMM/
Package Downloads Report Download Stats

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