To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowMap")

In most cases, you don't need to download the package archive at all.

flowMap

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see flowMap.

Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test

Bioconductor version: 3.1

flowMap quantifies the similarity of cell populations across multiple flow cytometry samples using a nonparametric multivariate statistical test. The method is able to map cell populations of different size, shape, and proportion across multiple flow cytometry samples. The algorithm can be incorporate in any flow cytometry work flow that requires accurat quantification of similarity between cell populations.

Author: Chiaowen Joyce Hsiao, Yu Qian, and Richard H. Scheuermann

Maintainer: Chiaowen Joyce Hsiao <joyce.hsiao1 at gmail.com>

Citation (from within R, enter citation("flowMap")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowMap")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowMap")

PDF R Script Mapping cell populations in flow cytometry data flowMap-FR

PDF Reference Manual

Text NEWS

Details

biocViews FlowCytometry, MultipleComparison, Software

Version 1.6.0

In Bioconductor since BioC 2.13 (R-3.0) (2.5 years)

License GPL (>=2)

Depends R (>= 3.0.1), ade4 (>= 1.5-2), doParallel (>= 1.0.3), abind (>= 1.4.0), reshape2 (>= 1.2.2), scales (>= 0.2.3), Matrix (>= 1.1-4), methods (>= 2.14)

Imports

LinkingTo

Suggests BiocStyle, knitr

SystemRequirements

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URL

Depends On Me

Imports Me

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Build Report