To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cqn")

In most cases, you don't need to download the package archive at all.

cqn

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see cqn.

Conditional quantile normalization

Bioconductor version: 3.1

A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.

Author: Jean (Zhijin) Wu, Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

Citation (from within R, enter citation("cqn")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cqn")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cqn")
PDF R Script CQN (Conditional Quantile Normalization)
PDF Reference Manual
Text NEWS

Details

Version 1.14.0
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License Artistic-2.0
Depends R (>= 2.10.0), mclust, nor1mix, stats, preprocessCore, splines, quantreg
Imports splines
LinkingTo
Suggests scales, edgeR
SystemRequirements
Enhances
URL
Depends On Me
Imports Me tweeDEseq
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source cqn_1.14.0.tar.gz
Windows Binary cqn_1.14.0.zip
Mac OS X 10.6 (Snow Leopard) cqn_1.14.0.tgz
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

AltStyle によって変換されたページ (->オリジナル) /