To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("compEpiTools")

In most cases, you don't need to download the package archive at all.

compEpiTools

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see compEpiTools.

Tools for computational epigenomics

Bioconductor version: 3.1

Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.

Author: http://genomics.iit.it/groups/computational-epigenomics.html

Maintainer: Kamal Kishore <kamal.fartiyal84 at gmail.com>

Citation (from within R, enter citation("compEpiTools")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("compEpiTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("compEpiTools")
PDF R Script compEpiTools.pdf
PDF Reference Manual
Text NEWS

Details

biocViews Coverage, GeneExpression, GenomeAnnotation, Sequencing, Software, Visualization
Version 1.2.6
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License GPL
Depends R (>= 3.1.1), methods, topGO, GenomicRanges
Imports AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel, grDevices, gplots, IRanges, GenomicFeatures, XVector, methylPipe, GO.db, S4Vectors, GenomeInfoDb, ggplot2
LinkingTo
Suggests BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, knitr, rtracklayer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source compEpiTools_1.2.6.tar.gz
Windows Binary compEpiTools_1.2.6.zip
Mac OS X 10.6 (Snow Leopard) compEpiTools_1.2.6.tgz
Mac OS X 10.9 (Mavericks) compEpiTools_1.2.6.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/compEpiTools/tree/release-3.1
Package Short Url http://bioconductor.org/packages/compEpiTools/
Package Downloads Report Download Stats

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