To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("aCGH")

In most cases, you don't need to download the package archive at all.

aCGH

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see aCGH.

Classes and functions for Array Comparative Genomic Hybridization data.

Bioconductor version: 3.1

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author: Jane Fridlyand <jfridlyand at cc.ucsf.edu>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Citation (from within R, enter citation("aCGH")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("aCGH")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("aCGH")
PDF R Script aCGH Overview
PDF Reference Manual

Details

biocViews CopyNumberVariation, DataImport, Genetics, Software
Version 1.46.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License GPL-2
Depends R (>= 2.10), cluster, survival, multtest
Imports Biobase, cluster, grDevices, graphics, methods, multtest, stats, survival, splines, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me CRImage
Imports Me ADaCGH2, snapCGH
Suggests Me beadarraySNP
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source aCGH_1.46.0.tar.gz
Windows Binary aCGH_1.46.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) aCGH_1.46.0.tgz
Mac OS X 10.9 (Mavericks) aCGH_1.46.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/aCGH/tree/release-3.1
Package Short Url http://bioconductor.org/packages/aCGH/
Package Downloads Report Download Stats

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