To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SpacePAC")

In most cases, you don't need to download the package archive at all.

SpacePAC

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see SpacePAC.

Identification of Mutational Clusters in 3D Protein Space via Simulation.

Bioconductor version: 3.1

Identifies clustering of somatic mutations in proteins via a simulation approach while considering the protein's tertiary structure.

Author: Gregory Ryslik, Hongyu Zhao

Maintainer: Gregory Ryslik <gregory.ryslik at yale.edu>

Citation (from within R, enter citation("SpacePAC")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SpacePAC")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SpacePAC")
PDF R Script SpacePAC: Identifying mutational clusters in 3D protein space using simulation
PDF Reference Manual
Text NEWS

Details

Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0) (2.5 years)
License GPL-2
Depends R (>= 2.15), iPAC
Imports
LinkingTo
Suggests RUnit, BiocGenerics, rgl
SystemRequirements
Enhances
URL
Depends On Me QuartPAC
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SpacePAC_1.6.0.tar.gz
Windows Binary SpacePAC_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) SpacePAC_1.6.0.tgz
Package Downloads Report Download Stats

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