To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")

In most cases, you don't need to download the package archive at all.

SeqVarTools

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see SeqVarTools.

Tools for variant data

Bioconductor version: 3.1

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.

Author: Stephanie M. Gogarten, Xiuwen Zheng

Maintainer: Stephanie M. Gogarten <sdmorris at u.washington.edu>, Xiuwen Zheng <zhengx at u.washington.edu>

Citation (from within R, enter citation("SeqVarTools")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("SeqVarTools")
PDF R Script Introduction to SeqVarTools
PDF Reference Manual
Text NEWS

Details

biocViews GeneticVariability, Genetics, SNP, Sequencing, Software
Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0) (2.5 years)
License GPL-3
Depends SeqArray(>= 1.1.1)
Imports methods, gdsfmt, GenomicRanges, IRanges, S4Vectors, GWASExactHW, VariantAnnotation
LinkingTo
Suggests BiocGenerics, BiocStyle, RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SeqVarTools_1.6.0.tar.gz
Windows Binary SeqVarTools_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) SeqVarTools_1.6.0.tgz
Mac OS X 10.9 (Mavericks) SeqVarTools_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/SeqVarTools/tree/release-3.1
Package Short Url http://bioconductor.org/packages/SeqVarTools/
Package Downloads Report Download Stats

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