To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RDAVIDWebService")

In most cases, you don't need to download the package archive at all.

RDAVIDWebService

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see RDAVIDWebService.

An R Package for retrieving data from DAVID into R objects using Web Services API.

Bioconductor version: 3.1

Tools for retrieving data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This package offers the main functionalities of DAVID website including: i) user friendly connectivity to upload gene/background list/s, change gene/background position, select current specie/s, select annotations, etc. ii) Reports of the submitted Gene List, Annotation Category Summary, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table

Author: Cristobal Fresno and Elmer A. Fernandez

Maintainer: Cristobal Fresno <cfresno at bdmg.com.ar>

Citation (from within R, enter citation("RDAVIDWebService")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RDAVIDWebService")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RDAVIDWebService")
PDF R Script RDAVIDWebService: a versatile R interface to DAVID
PDF Reference Manual
Text NEWS

Details

Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0) (2.5 years)
License GPL (>=2)
Depends R (>= 2.14.1), methods, graph, GOstats, ggplot2
Imports Category, GO.db, RBGL, rJava
LinkingTo
Suggests Rgraphviz
SystemRequirements
Enhances
Depends On Me CompGO
Imports Me
Suggests Me clusterProfiler, FGNet

Package Archives

Follow Installation instructions to use this package in your R session.

Mac OS X 10.6 (Snow Leopard) RDAVIDWebService_1.6.0.tgz
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