To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OmicsMarkeR")

In most cases, you don't need to download the package archive at all.

OmicsMarkeR

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see OmicsMarkeR.

Classification and Feature Selection for 'Omics' Datasets

Bioconductor version: 3.1

Tools for classification and feature selection for 'omics' level datasets. It is a tool to provide multiple multivariate classification and feature selection techniques complete with multiple stability metrics and aggregation techniques. It is primarily designed for analysis of metabolomics datasets but potentially extendable to proteomics and transcriptomics applications.

Author: Charles E. Determan Jr. <cdetermanjr at gmail.com>

Maintainer: Charles E. Determan Jr. <cdetermanjr at gmail.com>

Citation (from within R, enter citation("OmicsMarkeR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OmicsMarkeR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OmicsMarkeR")

PDF R Script A Short Introduction to the OmicMarkeR Package

PDF Reference Manual

Text NEWS

Details

biocViews Classification, FeatureExtraction, Metabolomics, Software

Version 1.0.1

In Bioconductor since BioC 3.1 (R-3.2) (1 year)

License GPL-3

Depends R (>= 3.2.0)

Imports plyr (>= 1.8), data.table (>= 1.9.4), caret (>= 6.0-37), DiscriMiner (>= 0.1-29), e1071 (>= 1.6-1), randomForest (>= 4.6-10), gbm (>= 2.1), pamr (>= 1.54.1), glmnet (>= 1.9-5), caTools (>= 1.14), foreach (>= 1.4.1), permute (>= 0.7-0), assertive (>= 0.3-0), assertive.base (>= 0.0-1)

LinkingTo

Suggests testthat, BiocStyle, knitr

SystemRequirements

Enhances

URL http://github.com/cdeterman/OmicsMarkeR

BugReports http://github.com/cdeterman/OmicsMarkeR/issues/new

Depends On Me

Imports Me

Suggests Me

Build Report