To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NetPathMiner")
In most cases, you don't need to download the package archive at all.
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see NetPathMiner.
Bioconductor version: 3.1
NetPathMiner is a general framework for network path mining using genome-scale networks. It constructs networks from KGML, SBML and BioPAX files, providing three network representations, metabolic, reaction and gene representations. NetPathMiner finds active paths and applies machine learning methods to summarize found paths for easy interpretation. It also provides static and interactive visualizations of networks and paths to aid manual investigation.
Author: Ahmed Mohamed <mohamed at kuicr.kyoto-u.ac.jp>, Tim Hancock <timothy.hancock at kuicr.kyoto-u.ac.jp>, Ichigaku Takigawa <takigawa at kuicr.kyoto-u.ac.jp>, Nicolas Wicker <nicolas.wicker at unistra.fr>
Maintainer: Ahmed Mohamed <mohamed at kuicr.kyoto-u.ac.jp>
Citation (from within R,
enter citation("NetPathMiner")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NetPathMiner")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NetPathMiner")
Follow Installation instructions to use this package in your R session.
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