To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MiRaGE")

In most cases, you don't need to download the package archive at all.

MiRaGE

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see MiRaGE.

MiRNA Ranking by Gene Expression

Bioconductor version: 3.1

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

Author: Y-h. Taguchi <tag at granular.com>

Maintainer: Y-h. Taguchi <tag at granular.com>

Citation (from within R, enter citation("MiRaGE")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MiRaGE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("MiRaGE")
PDF R Script How to use MiRaGE Package
PDF Reference Manual

Details

biocViews GeneExpression, Microarray, RNASeq, SAGE, Sequencing, Software
Version 1.10.0
In Bioconductor since BioC 2.11 (R-2.15) (3.5 years)
License GPL
Depends R (>= 3.1.0), Biobase(>= 2.23.3)
Imports AnnotationDbi, BiocGenerics
LinkingTo
Suggests seqinr (>= 3.0.7), biomaRt(>= 2.19.1), GenomicFeatures(>= 1.15.4), Biostrings(>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MiRaGE_1.10.0.tar.gz
Windows Binary MiRaGE_1.10.0.zip
Mac OS X 10.6 (Snow Leopard) MiRaGE_1.10.0.tgz
Mac OS X 10.9 (Mavericks) MiRaGE_1.10.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/MiRaGE/tree/release-3.1
Package Short Url http://bioconductor.org/packages/MiRaGE/
Package Downloads Report Download Stats

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