To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IVAS")

In most cases, you don't need to download the package archive at all.

IVAS

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see IVAS.

Identification of genetic Variants affecting Alternative Splicing

Bioconductor version: 3.1

Identification of genetic variants affecting alternative splicing.

Author: Seonggyun Han, Sangsoo Kim

Maintainer: Seonggyun Han <hangost at ssu.ac.kr>

Citation (from within R, enter citation("IVAS")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IVAS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("IVAS")
PDF R Script IVAS : Identification of genetic Variants affecting Alternative Splicing
PDF Reference Manual
Text NEWS

Details

biocViews AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, GeneRegulation, RNASeq, Regression, SNP, Sequencing, Software, Transcription
Version 1.0.0
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License GPL-2
Depends R (> 3.0.0), GenomicFeatures
Imports doParallel, lme4, Matrix, BiocGenerics, GenomicRanges, IRanges, foreach, AnnotationDbi, S4Vectors, GenomeInfoDb
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source IVAS_1.0.0.tar.gz
Windows Binary IVAS_1.0.0.zip
Mac OS X 10.6 (Snow Leopard) IVAS_1.0.0.tgz
Mac OS X 10.9 (Mavericks) IVAS_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/IVAS/tree/release-3.1
Package Short Url http://bioconductor.org/packages/IVAS/
Package Downloads Report Download Stats

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