To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicFiles")

In most cases, you don't need to download the package archive at all.

GenomicFiles

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see GenomicFiles.

Distributed computing by file or by range

Bioconductor version: 3.1

This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.

Author: Valerie Obenchain, Michael Love, Martin Morgan

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GenomicFiles")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicFiles")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicFiles")

PDF R Script Introduction to GenomicFiles

PDF Reference Manual

Text NEWS

Video Reading from a BAM file - Part 2

Details

biocViews Coverage, DataImport, Genetics, Infrastructure, Sequencing, Software

Version 1.4.0

In Bioconductor since BioC 2.14 (R-3.1) (2 years)

License Artistic-2.0

Depends R (>= 3.1.0), methods, BiocGenerics(>= 0.11.2), S4Vectors(>= 0.4.0), IRanges(>= 2.0.0), Rsamtools(>= 1.17.29), GenomicRanges(>= 1.19.43), rtracklayer(>= 1.25.3), BiocParallel(>= 1.1.0)

Imports GenomicAlignments

LinkingTo

Suggests BiocStyle, RUnit, genefilter, deepSNV, RNAseqData.HNRNPC.bam.chr14, Biostrings

SystemRequirements

Enhances

URL

Depends On Me

Imports Me derfinder

Suggests Me

Build Report