To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenoView")

In most cases, you don't need to download the package archive at all.

GenoView

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see GenoView.

Condensed, overlapped plotting of genomic data tracks

Bioconductor version: 3.1

Superimposing input data over existing genomic references allows for fast, accurate visual comparisons. The GenoView package is a novel bioinformatics package which condenses genomic data tracks to offer a comprehensive view of genetic variants. Its main function is to display mutation data over exons and protein domains, which easily identifies potential genomic locations of interest.

Author: Sharon Lee, Dennis Wang

Maintainer: Sharon Lee <s274lee at uwaterloo.ca>

Citation (from within R, enter citation("GenoView")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenoView")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("GenoView")
PDF R Script GenoView
PDF Reference Manual

Details

biocViews Software, Visualization
Version 1.2.0
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License GPL-3
Depends R (>= 2.10), gridExtra, GenomicRanges
Imports ggbio, ggplot2, grid, biovizBase
LinkingTo
Suggests TxDb.Hsapiens.UCSC.hg19.knownGene, PFAM.db, AnnotationDbi, gtable, gWidgets, gWidgetsRGtk2, RGtk2, RColorBrewer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GenoView_1.2.0.tar.gz
Windows Binary GenoView_1.2.0.zip
Mac OS X 10.6 (Snow Leopard) GenoView_1.2.0.tgz
Mac OS X 10.9 (Mavericks) GenoView_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GenoView/tree/release-3.1
Package Short Url http://bioconductor.org/packages/GenoView/
Package Downloads Report Download Stats

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