To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ExiMiR")

In most cases, you don't need to download the package archive at all.

ExiMiR

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see ExiMiR.

R functions for the normalization of Exiqon miRNA array data

Bioconductor version: 3.1

This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.

Author: Sylvain Gubian <DL.RSupport at pmi.com>, Alain Sewer <DL.RSupport at pmi.com>, PMP SA

Maintainer: Sylvain Gubian <DL.RSupport at pmi.com>

Citation (from within R, enter citation("ExiMiR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ExiMiR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("ExiMiR")
PDF R Script Description of ExiMiR
PDF Reference Manual
Text NEWS
Text LICENSE

Details

biocViews GeneExpression, Microarray, OneChannel, Preprocessing, Software, Transcription, TwoChannel
Version 2.10.0
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License GPL-2
Depends R (>= 2.10), Biobase(>= 2.5.5), affy(>= 1.26.1), limma
Imports affyio(>= 1.13.3), Biobase(>= 2.5.5), preprocessCore(>= 1.10.0)
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ExiMiR_2.10.0.tar.gz
Windows Binary ExiMiR_2.10.0.zip
Mac OS X 10.6 (Snow Leopard) ExiMiR_2.10.0.tgz
Mac OS X 10.9 (Mavericks) ExiMiR_2.10.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ExiMiR/tree/release-3.1
Package Short Url http://bioconductor.org/packages/ExiMiR/
Package Downloads Report Download Stats

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