To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

In most cases, you don't need to download the package archive at all.

DECIPHER

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see DECIPHER.

Database Enabled Code for Ideal Probe Hybridization Employing R

Bioconductor version: 3.1

A toolset for deciphering and managing biological sequences.

Author: Erik Wright

Maintainer: Erik Wright <DECIPHER at cae.wisc.edu>

Citation (from within R, enter citation("DECIPHER")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("DECIPHER")
PDF R Script Design Group-Specific FISH Probes
PDF R Script Design Group-Specific Primers
PDF R Script Design Microarray Probes
PDF R Script Design Primers That Yield Group-Specific Signatures
PDF R Script Finding Chimeric Sequences
PDF R Script Getting Started DECIPHERing
PDF R Script The Art of Multiple Sequence Alignment in R
PDF Reference Manual

Details

biocViews Alignment, Clustering, DataImport, Genetics, Microarray, QualityControl, Sequencing, Software, Visualization, qPCR
Version 1.14.5
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License GPL-3
Depends R (>= 2.13.0), Biostrings(>= 2.35.12), RSQLite (>= 1.0.0), stats, parallel
Imports methods, DBI, S4Vectors, IRanges, XVector
LinkingTo Biostrings, RSQLite, S4Vectors, IRanges, XVector
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DECIPHER_1.14.5.tar.gz
Windows Binary DECIPHER_1.14.5.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DECIPHER_1.14.5.tgz
Mac OS X 10.9 (Mavericks) DECIPHER_1.14.5.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/DECIPHER/tree/release-3.1
Package Short Url http://bioconductor.org/packages/DECIPHER/
Package Downloads Report Download Stats

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