To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CopywriteR")
In most cases, you don't need to download the package archive at all.
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see CopywriteR.
Bioconductor version: 3.1
CopywriteR extracts DNA copy number information from targeted sequencing by utiizing off-target reads. It allows for extracting uniformly distributed copy number information, can be used without reference, and can be applied to sequencing data obtained from various techniques including chromatin immunoprecipitation and target enrichment on small gene panels. Thereby, CopywriteR constitutes a widely applicable alternative to available copy number detection tools.
Author: Thomas Kuilman
Maintainer: Thomas Kuilman <t.kuilman at nki.nl>
Citation (from within R,
enter citation("CopywriteR")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CopywriteR")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CopywriteR")
Follow Installation instructions to use this package in your R session.
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