To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPsim")

In most cases, you don't need to download the package archive at all.

ChIPsim

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see ChIPsim.

Simulation of ChIP-seq experiments

Bioconductor version: 3.1

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author: Peter Humburg

Maintainer: Peter Humburg <Peter.Humburg at well.ox.ac.uk>

Citation (from within R, enter citation("ChIPsim")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPsim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("ChIPsim")
PDF R Script Simulating ChIP-seq experiments
PDF Reference Manual

Details

biocViews ChIPSeq, Infrastructure, Software
Version 1.22.0
In Bioconductor since BioC 2.5 (R-2.10) (6.5 years)
License GPL (>= 2)
Depends Biostrings(>= 2.29.2)
Imports IRanges, XVector, Biostrings, ShortRead, graphics, methods, stats, utils
LinkingTo
Suggests actuar, zoo
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ChIPsim_1.22.0.tar.gz
Windows Binary ChIPsim_1.22.0.zip
Mac OS X 10.6 (Snow Leopard) ChIPsim_1.22.0.tgz
Mac OS X 10.9 (Mavericks) ChIPsim_1.22.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ChIPsim/tree/release-3.1
Package Short Url http://bioconductor.org/packages/ChIPsim/
Package Downloads Report Download Stats

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