To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Basic4Cseq")
In most cases, you don't need to download the package archive at all.
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see Basic4Cseq.
Bioconductor version: 3.1
Basic4Cseq is an R/Bioconductor package for basic filtering, analysis and subsequent visualization of 4C-seq data. Virtual fragment libraries can be created for any BSGenome package, and filter functions for both reads and fragments and basic quality controls are included. Fragment data in the vicinity of the experiment's viewpoint can be visualized as a coverage plot based on a running median approach and a multi-scale contact profile.
Author: Carolin Walter
Maintainer: Carolin Walter <carolin.walter at uni-muenster.de>
Citation (from within R,
enter citation("Basic4Cseq")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Basic4Cseq")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Basic4Cseq")
Follow Installation instructions to use this package in your R session.
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