To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("tweeDEseq")

In most cases, you don't need to download the package archive at all.

tweeDEseq

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see tweeDEseq.

RNA-seq data analysis using the Poisson-Tweedie family of distributions

Bioconductor version: 3.0

Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.

Author: Juan R Gonzalez <jrgonzalez at creal.cat> and Mikel Esnaola <mesnaola at creal.cat> (with contributions from Robert Castelo <robert.castelo at upf.edu>)

Maintainer: Juan R Gonzalez <jrgonzalez at creal.cat>

Citation (from within R, enter citation("tweeDEseq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("tweeDEseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("tweeDEseq")
PDF R Script tweeDEseq: analysis of RNA-seq data using the Poisson-Tweedie family of distributions
PDF Reference Manual

Details

biocViews DifferentialExpression, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.12.0
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License GPL (>= 2)
Depends R (>= 2.12.0)
Imports MASS, limma, edgeR, parallel, cqn
LinkingTo
Suggests tweeDEseqCountData, xtable
SystemRequirements
Enhances
URL http://www.creal.cat/jrgonzalez/software.htm
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source tweeDEseq_1.12.0.tar.gz
Windows Binary tweeDEseq_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) tweeDEseq_1.12.0.tgz
Mac OS X 10.9 (Mavericks) tweeDEseq_1.12.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/tweeDEseq/tree/release-3.0
Package Short Url http://bioconductor.org/packages/tweeDEseq/
Package Downloads Report Download Stats

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