To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spade")

In most cases, you don't need to download the package archive at all.

spade

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see spade.

SPADE -- An analysis and visualization tool for Flow Cytometry

Bioconductor version: 3.0

SPADE, or Spanning tree Progression of Density normalized Events, is an analysis and visualization tool for high dimensional flow cytometry data that organizes cells into hierarchies of related phenotypes.

Author: M. Linderman, P. Qiu, E. Simonds, Z. Bjornson

Maintainer: Zach Bjornson <bjornson at stanford.edu>

Citation (from within R, enter citation("spade")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spade")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("spade")
PDF R Script spade package
PDF Reference Manual
Text LICENSE

Details

biocViews Clustering, FlowCytometry, GUI, GraphAndNetwork, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 2.10 (R-2.15) (4 years)
License GPL-2
Depends R (>= 2.11), igraph, Rclusterpp
Imports Biobase, flowCore
LinkingTo
Suggests flowViz
SystemRequirements
Enhances
URL http://cytospade.org
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source spade_1.14.0.tar.gz
Windows Binary spade_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) spade_1.14.0.tgz
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/spade/tree/release-3.0
Package Short Url http://bioconductor.org/packages/spade/
Package Downloads Report Download Stats

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