To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("regionReport")

In most cases, you don't need to download the package archive at all.

regionReport

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see regionReport.

Generate HTML reports for exploring a set of regions

Bioconductor version: 3.0

Generate HTML reports to explore a set of regions such as the results from annotation-agnostic expression analysis of RNA-seq data at base-pair resolution performed by derfinder.

Author: Leonardo Collado-Torres [aut, cre], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]

Maintainer: Leonardo Collado-Torres <lcollado at jhu.edu>

Citation (from within R, enter citation("regionReport")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("regionReport")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("regionReport")
HTML R Script Introduction to regionReport
PDF Reference Manual
Text NEWS

Details

biocViews Coverage, DifferentialExpression, RNASeq, Sequencing, Software, Transcription, Visualization
Version 1.0.5
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License Artistic-2.0
Depends R (>= 3.1.1)
Imports derfinder(>= 1.0.0), derfinderPlot(>= 1.0.0), devtools (>= 1.6), GenomeInfoDb, GenomicRanges, ggbio(>= 1.13.13), ggplot2, grid, gridExtra, IRanges, knitcitations (>= 1.0.1), knitr (>= 1.6), knitrBootstrap (>= 0.9.0), mgcv, RColorBrewer, rmarkdown (>= 0.3.3)
LinkingTo
Suggests biovizBase, Cairo, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL https://github.com/lcolladotor/regionReport
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source regionReport_1.0.5.tar.gz
Windows Binary regionReport_1.0.5.zip
Mac OS X 10.6 (Snow Leopard) regionReport_1.0.5.tgz
Mac OS X 10.9 (Mavericks) regionReport_1.0.5.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/regionReport/tree/release-3.0
Package Short Url http://bioconductor.org/packages/regionReport/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

AltStyle によって変換されたページ (->オリジナル) /