To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("htSeqTools")

In most cases, you don't need to download the package archive at all.

htSeqTools

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see htSeqTools.

Quality Control, Visualization and Processing for High-Throughput Sequencing data

Bioconductor version: 3.0

We provide efficient, easy-to-use tools for High-Throughput Sequencing (ChIP-seq, RNAseq etc.). These include MDS plots (analogues to PCA), detecting inefficient immuno-precipitation or over-amplification artifacts, tools to identify and test for genomic regions with large accumulation of reads, and visualization of coverage profiles.

Author: Evarist Planet, Camille Stephan-Otto, Oscar Reina, Oscar Flores, David Rossell

Maintainer: Oscar Reina <oscar.reina at irbbarcelona.org>

Citation (from within R, enter citation("htSeqTools")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("htSeqTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("htSeqTools")
PDF R Script Manual for the htSeqTools library
PDF Reference Manual
Text NEWS

Details

biocViews QualityControl, Sequencing, Software
Version 1.12.0
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License GPL (>=2)
Depends R (>= 2.12.2), methods, BiocGenerics(>= 0.1.0), Biobase, IRanges, methods, MASS, BSgenome, GenomeInfoDb(>= 1.1.3), GenomicRanges(>= 1.17.11)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances multicore
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source htSeqTools_1.12.0.tar.gz
Windows Binary htSeqTools_1.12.0.zip
Mac OS X 10.6 (Snow Leopard) htSeqTools_1.12.0.tgz
Mac OS X 10.9 (Mavericks) htSeqTools_1.12.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/htSeqTools/tree/release-3.0
Package Short Url http://bioconductor.org/packages/htSeqTools/
Package Downloads Report Download Stats

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