To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

In most cases, you don't need to download the package archive at all.

clusterProfiler

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see clusterProfiler.

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: 3.0

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("clusterProfiler")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("clusterProfiler")
PDF R Script An introduction to clusterProfiler
PDF Reference Manual
Text NEWS

Details

biocViews Clustering, GO, GeneSetEnrichment, MultipleComparison, Pathways, Software, Visualization
Version 2.0.1
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License Artistic-2.0
Depends R (>= 3.0.0)
Imports methods, stats4, plyr, ggplot2, AnnotationDbi, GO.db, KEGG.db, DOSE, GOSemSim
LinkingTo
Suggests org.Hs.eg.db, ReactomePA, pathview, knitr
SystemRequirements
Enhances
URL https://github.com/GuangchuangYu/clusterProfiler
Depends On Me
Imports Me
Suggests Me ChIPseeker, DOSE, GOSemSim, ReactomePA
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source clusterProfiler_2.0.1.tar.gz
Windows Binary clusterProfiler_2.0.1.zip
Mac OS X 10.6 (Snow Leopard) clusterProfiler_2.0.1.tgz
Mac OS X 10.9 (Mavericks) clusterProfiler_2.0.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/clusterProfiler/tree/release-3.0
Package Short Url http://bioconductor.org/packages/clusterProfiler/
Package Downloads Report Download Stats

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