To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("adSplit")

In most cases, you don't need to download the package archive at all.

adSplit

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see adSplit.

Annotation-Driven Clustering

Bioconductor version: 3.0

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Author: Claudio Lottaz, Joern Toedling

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

Citation (from within R, enter citation("adSplit")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("adSplit")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("adSplit")

PDF R Script Annotation-Driven Clustering

PDF Reference Manual

Details

biocViews Clustering, Microarray, Software

Version 1.36.0

In Bioconductor since BioC 1.8 (R-2.3) (10 years)

License GPL (>= 2)

Depends R (>= 2.1.0), methods (>= 2.1.0)

Imports AnnotationDbi, Biobase(>= 1.5.12), cluster (>= 1.9.1), GO.db(>= 1.8.1), graphics, grDevices, KEGG.db(>= 1.8.1), methods, multtest(>= 1.6.0), stats (>= 2.1.0)

LinkingTo

Suggests golubEsets(>= 1.0), vsn(>= 1.5.0), hu6800.db(>= 1.8.1)

SystemRequirements

Enhances

URL http://compdiag.molgen.mpg.de/software/index.shtml

Depends On Me

Imports Me

Suggests Me

Build Report