To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rolexa")

In most cases, you don't need to download the package archive at all.

Rolexa

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see Rolexa.

Statistical analysis of Solexa sequencing data

Bioconductor version: 3.0

Provides probabilistic base calling, quality checks and diagnostic plots for Solexa sequencing data

Author: Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef

Maintainer: Jacques Rougemont <jacques.rougemont at epfl.ch>

Citation (from within R, enter citation("Rolexa")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rolexa")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("Rolexa")
PDF R Script Rolexa
PDF Reference Manual

Details

biocViews DataImport, Preprocessing, QualityControl, Sequencing, Software
Version 1.22.0
In Bioconductor since BioC 2.5 (R-2.10) (6.5 years)
License GPL-2
Depends R (>= 2.9.0), graphics, grDevices, methods, ShortRead
Imports mclust, Biostrings, graphics, grDevices, IRanges, methods, ShortRead, stats
LinkingTo
Suggests
SystemRequirements
Enhances fork
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Rolexa_1.22.0.tar.gz
Windows Binary Rolexa_1.22.0.zip
Mac OS X 10.6 (Snow Leopard) Rolexa_1.22.0.tgz
Mac OS X 10.9 (Mavericks) Rolexa_1.22.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/Rolexa/tree/release-3.0
Package Short Url http://bioconductor.org/packages/Rolexa/
Package Downloads Report Download Stats

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