To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CALIB")

In most cases, you don't need to download the package archive at all.

CALIB

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see CALIB.

Calibration model for estimating absolute expression levels from microarray data

Bioconductor version: 3.0

This package contains functions for normalizing spotted microarray data, based on a physically motivated calibration model. The model parameters and error distributions are estimated from external control spikes.

Author: Hui Zhao, Kristof Engelen, Bart De Moor and Kathleen Marchal

Maintainer: Hui Zhao <hui.zhao at biw.kuleuven.be>

Citation (from within R, enter citation("CALIB")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CALIB")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("CALIB")
PDF R Script CALIB Overview
PDF Reference Manual

Details

biocViews Microarray, Preprocessing, Software, TwoChannel
Version 1.32.0
In Bioconductor since BioC 2.0 (R-2.5) (9 years)
License LGPL
Depends R (>= 2.10), limma, methods
Imports limma, methods, graphics, stats, utils
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CALIB_1.32.0.tar.gz
Windows Binary CALIB_1.32.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CALIB_1.32.0.tgz
Mac OS X 10.9 (Mavericks) CALIB_1.32.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/CALIB/tree/release-3.0
Package Short Url http://bioconductor.org/packages/CALIB/
Package Downloads Report Download Stats

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