To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationHub")

In most cases, you don't need to download the package archive at all.

AnnotationHub

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see AnnotationHub.

A client for retrieving Bioconductor objects from AnnotationHub

Bioconductor version: 3.0

A client for retrieving data from the Bioconductor AnnotationHub online services.

Author: Marc Carlson, Sonali Arora

Maintainer: Marc Carlson <mcarlson at fhcrc.org>

Citation (from within R, enter citation("AnnotationHub")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationHub")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("AnnotationHub")
PDF R Script AnnotationHub: A client package for retrieving data from the AnnotationHub web service
PDF R Script How to write recipes for new resources for the AnnotationHub
PDF Reference Manual
Text NEWS
Video Using AnnotationDb objects

Details

biocViews Annotation, Infrastructure, Software
Version 1.6.0
In Bioconductor since BioC 2.12 (R-3.0) (3 years)
License Artistic-2.0
Depends S4Vectors(>= 0.2.3), IRanges(>= 1.99.28)
Imports methods, stats, utils, rjson, BiocGenerics, httr, BiocInstaller(>= 1.11.0), AnnotationDbi, GenomicRanges, interactiveDisplay(>= 1.0.23)
LinkingTo
Suggests RUnit, RCurl, Rsamtools
SystemRequirements
Enhances
URL
Depends On Me RefNet
Imports Me
Suggests Me GenomicRanges
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AnnotationHub_1.6.0.tar.gz
Windows Binary AnnotationHub_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) AnnotationHub_1.6.0.tgz
Mac OS X 10.9 (Mavericks) AnnotationHub_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/AnnotationHub/tree/release-3.0
Package Short Url http://bioconductor.org/packages/AnnotationHub/
Package Downloads Report Download Stats

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