To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("snpMatrix")

In most cases, you don't need to download the package archive at all.

snpMatrix

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see snpMatrix.

The snp.matrix and X.snp.matrix classes

Bioconductor version: 2.8

Implements classes and methods for large-scale SNP association studies

Author: David Clayton <david.clayton at cimr.cam.ac.uk> and Hin-Tak Leung <htl10 at users.sourceforge.net>

Maintainer: David Clayton <david.clayton at cimr.cam.ac.uk>

Citation (from within R, enter citation("snpMatrix")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("snpMatrix")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("snpMatrix")
PDF clustering-comparison-vignette.pdf
PDF imputation-vignette.pdf
PDF pca-vignette.pdf
PDF snpMatrix-paper-HumanHeridity2007.pdf
PDF snpMatrix-vignette.pdf
PDF snpStatsBug-vignette.pdf
PDF tdt-vignette.pdf
PDF Reference Manual

Details

biocViews GeneticVariability, Microarray, SNP, Software
Version 1.16.5
In Bioconductor since BioC 2.2 (R-2.7) (8 years)
License GPL-3
Depends R (>= 2.3.0), survival, methods
Imports graphics, grDevices, methods, stats, survival, utils
LinkingTo
Suggests hexbin
SystemRequirements
Enhances
URL http://www-gene.cimr.cam.ac.uk/clayton/software/
Depends On Me
Imports Me
Suggests Me crlmm
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source snpMatrix_1.16.5.tar.gz
Windows Binary snpMatrix_1.16.5.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/snpMatrix/tree/release-2.8
Package Short Url http://bioconductor.org/packages/snpMatrix/
Package Downloads Report Download Stats

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