marray

Exploratory analysis for two-color spotted microarray data

Bioconductor version: 2.7

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.

Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("marray")

To cite this package in a publication, start R and enter:

 citation("marray")

PDF ExampleHTML.pdf

PDF R Script marray Normalization

PDF R Script marray Overview

PDF R Script marrayClasses Overview

PDF R Script marrayClasses Tutorial (short)

PDF R Script marrayInput Introduction

PDF R Script marrayPlots Overview

PDF widget1.pdf

PDF Reference Manual

Depends R (>= 1.9.0), limma, methods

Imports

Suggests tkWidgets

System Requirements

License LGPL

Version 1.28.0

Since Bioconductor 1.6 (R-2.1) or earlier

Windows Binary marray_1.28.0.zip (32- & 64-bit)

MacOS 10.5 (Leopard) binary marray_1.28.0.tgz

Common Bioconductor workflows include:

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