exonmap

High level analysis of Affymetrix exon array data (DEPRECATED please use xmapcore)

Bioconductor version: 2.7

[ This package has been deprecated. Please use xmapcore instead. ] Provides fine grained annotation of Affymetrix exon arrays, including mappings between the array probes and probesets and the Ensembl exons, transcripts and genes they target.

Author: Crispin J Miller Michal Okoniewski, Tim Yates

Maintainer: Crispin Miller <cmiller at picr.man.ac.uk>

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("exonmap")

To cite this package in a publication, start R and enter:

 citation("exonmap")

Documentation

PDF exonmap.example.pdf
PDF exonmap.pdf
PDF INSTALL.pdf
PDF Reference Manual

Details

biocViews Microarray, OneChannel, Preprocessing, Transcription, DataImport, Bioinformatics, DifferentialExpression, Annotation, ReportWriting, Visualization
Depends R (>= 2.0), affy(>= 1.23.4), genefilter, RColorBrewer, RMySQL (>= 0.6-0), DBI, methods
Imports
Suggests
System Requirements
License GPL (>= 2)
URL http://www.bioconductor.org, http://bioinformatics.picr.man.ac.uk
Depends On Me
Imports Me
Suggests Me
Version 2.8.0
Since Bioconductor 2.0 (R-2.5)

Package Downloads

Package Source exonmap_2.8.0.tar.gz
Windows Binary exonmap_2.8.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary exonmap_2.8.0.tgz
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