cellHTS

Analysis of cell-based screens

Bioconductor version: 2.7

Analysis of cell-based RNA interference screens

Author: Wolfgang Huber <huber at ebi.ac.uk>, Ligia Bras <ligia at ebi.ac.uk>, Michael Boutros <m.boutros at dkfz.de>

Maintainer: Ligia Bras <ligia at ebi.ac.uk>

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("cellHTS")

To cite this package in a publication, start R and enter:

 citation("cellHTS")

PDF R Script Main vignette: End-to-end analysis of cell-based screens

PDF Rplots.pdf

PDF R Script Supplement: multi-channel assays

PDF R Script Supplement: two-way assays

PDF Reference Manual

Depends R (>= 2.5.0), prada(>= 1.9.4), RColorBrewer, Biobase(>= 1.11.12), genefilter(>= 1.11.2)

Imports

Suggests Category, GO.db, vsn(>= 2.0.35)

System Requirements

License Artistic-2.0

Depends On Me

Imports Me

Suggests Me prada

Version 1.20.0

Since Bioconductor 1.8 (R-2.3)

Windows Binary cellHTS_1.20.0.zip (32- & 64-bit)

MacOS 10.5 (Leopard) binary cellHTS_1.20.0.tgz

Common Bioconductor workflows include:

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