Bioconductor version: 2.7
Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.
Author: Henrik Bengtsson, James Bullard, Robert Gentleman, Kasper Daniel Hansen, Martin Morgan
Maintainer: Kasper Daniel Hansen <khansen at stat.berkeley.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("affxparser")
To cite this package in a publication, start R and enter:
citation("affxparser")
Common Bioconductor workflows include:
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